Home Notes Papers

Chromosomes, genes and proteins

Paper 1Paper 2Paper 3Paper 4

This section is examined in Paper 1, Paper 2, Paper 3 and Paper 4.

Chromosomes, Genes and Alleles (LO1-3)
Chromosomes are structures found in the nucleus of cells. They are made of DNA, which carries genetic information. This information is organized into units called genes. A gene is a specific length of DNA that contains the code to make a protein.

Different versions of the same gene are called alleles. For example, a gene might determine flower color, while different alleles determine whether the flower is purple or white.

Gene
A gene is defined as a length of DNA that codes for a protein.
Allele
An allele is defined as an alternative form of a gene.
⚠︎ Confusing Genes and Chromosomes
Error: Students often define a gene as 'a length of DNA on a chromosome' or confuse it with the chromosome itself.

Correction: A gene is specifically the functional unit (the code) for a protein. The chromosome is the physical structure that holds many genes together. Do not say a gene is a chromosome; say a gene is on a chromosome.

Defining Genes and Alleles
When to use: When asked to define 'gene' or 'allele'.

Why examiners accept this: The markscheme requires precise terminology. For a gene, you must mention DNA and that it codes for a protein. For an allele, you must state it is an alternative form of a gene.

Example: 'Define allele.' Answer: 'An alternative form of a gene.' (Do not just say 'a version of a gene' without context; 'alternative form' is the key phrase).

Common Definitions
Q:
What is a gene?
A:
A length of DNA that codes for a protein.
Q:
What is an allele?
A:
An alternative form of a gene.
Inheritance of Sex in Humans (LO4)

Humans have 23 pairs of chromosomes. The first 22 pairs are called autosomes because they are not involved in sex determination. The 23rd pair determines the biological sex and are called sex chromosomes.

  • Females have two X chromosomes (XX).
  • Males have one X and one Y chromosome (XY).

During gamete formation (meiosis), the chromosome pairs separate. Therefore:

  • All egg cells (female gametes) carry one X chromosome.
  • Sperm cells (male gametes) carry either an X or a Y chromosome.
Autosomes
The first 22 pairs of chromosomes in humans, which are not involved in sex determination.
⚠︎ Chromosomes in Gametes
Error: Believing that sperm cells contain both X and Y chromosomes.

Correction: Sperm cells are haploid. They contain only one sex chromosome, either X or Y, never both. Only body cells (diploid) have the XY pair.

Describing Sex Inheritance
When to use: When asked to describe how sex is inherited or what chromosomes are in gametes.

Why examiners accept this: You must distinguish between the constant X in eggs and the variable X/Y in sperm. The markscheme looks for 'X' in eggs and 'X or Y' in sperm.

Example: 'Describe the sex chromosomes in human sperm.' Answer: 'Sperm contain either an X chromosome or a Y chromosome.'

Sex Chromosomes
Q:
What are the sex chromosomes in a human male?
A:
XY
Q:
What sex chromosome is found in all human egg cells?
A:
X
From DNA to Proteins (LO5-7)
The sequence of bases in a gene determines the sequence of amino acids used to make a specific protein. This is the genetic code.

Different sequences of amino acids fold into different 3D shapes. The shape of a protein determines its function. For example:

  • Enzymes: Have an active site with a specific shape to bind substrates.
  • Receptors: Have a binding site with a specific shape to bind neurotransmitters or hormones.

DNA controls cell function by controlling the production of these proteins.

Protein Shape and Function
The specific sequence of amino acids determines the 3D shape of the protein. This shape is critical for function (e.g., enzyme active site or receptor binding site).
⚠︎ Protein Shape and Function
Error: Stating that the sequence of bases determines the function directly.

Correction: The sequence of bases determines the sequence of amino acids, which determines the shape, which determines the function. You must include the intermediate step of 'shape' or 'structure'.

Explaining Protein Function
When to use: When asked why the sequence of amino acids is important or how a receptor works.

Why examiners accept this: You must link structure to function. Use phrases like 'complementary shape' or 'specific binding site'.

Example: 'Explain why the shape of an enzyme is important.' Answer: 'The specific shape allows it to bind to its substrate/complementary shape.'

Protein Structure
Q:
How does the sequence of bases in DNA affect protein function?
A:
It determines the sequence of amino acids, which determines the shape of the protein.
Protein Synthesis Process (LO8)

Proteins are made in a two-stage process involving the nucleus and the cytoplasm:

  1. In the Nucleus: The gene coding for the protein remains in the nucleus (DNA never leaves). A copy of the gene is made called messenger RNA (mRNA). This mRNA molecule moves out of the nucleus into the cytoplasm.
  2. In the Cytoplasm: The mRNA passes through ribosomes. The ribosome reads the sequence of bases in the mRNA and assembles amino acids into a protein chain. The specific sequence of amino acids is determined by the sequence of bases in the mRNA.
Messenger RNA (mRNA)
A molecule that is a copy of a gene, made in the nucleus, which carries the genetic code to the ribosomes in the cytoplasm.
⚠︎ DNA Leaving the Nucleus
Error: Stating that DNA moves from the nucleus to the ribosome.

Correction: DNA stays in the nucleus. Only mRNA leaves the nucleus and goes to the ribosomes.

Describing Protein Synthesis
When to use: When asked to explain how a protein is made (usually 5-6 marks).

Why examiners accept this: You must mention the key locations and molecules: Nucleus, mRNA, Cytoplasm, Ribosome, and Amino acids. Do not describe the chemical mechanism of transcription/translation; just the flow.

Example: 'Explain how a protein is made.' Answer: 'The gene remains in the nucleus. mRNA is made as a copy. mRNA moves to the cytoplasm. Ribosomes assemble amino acids into protein based on the mRNA sequence.'

Protein Synthesis Steps
Q:
Outline how proteins are made.
A:
  1. Gene remains in nucleus.
  2. mRNA is a copy of the gene.
  3. mRNA moves to cytoplasm/ribosome.
  4. Ribosome assembles amino acids into protein.
Gene Expression and Cell Specialization (LO9)

Most body cells in an organism contain the same genes (the same DNA). However, different cells have different functions because they express different genes.

  • A cell only makes the specific proteins it needs for its function.
  • Many genes are 'switched off' or not expressed in a particular cell type.
  • For example, insulin is only made in pancreatic beta cells, not in skin cells, even though both have the insulin gene.
Gene Expression
The process by which information from a gene is used to create a functional product (protein). Not all genes are expressed in every cell.
⚠︎ Genes in Different Cells
Error: Believing that different body cells have different genes.

Correction: All body cells have the same genes. They differ only in which genes are expressed (turned on).

Explaining Cell Specialization
When to use: When asked why body cells have different functions despite having the same DNA.

Why examiners accept this: You must state that not all genes are expressed and that cells only produce the proteins they need.

Example: 'Explain how body cells can have different functions.' Answer: 'Not all genes are expressed/switched on. Cells only produce the specific proteins they need.'

Cell Specialization
Q:
Why do different body cells have different functions?
A:
Not all genes are expressed; cells only produce the specific proteins they need.
Haploid and Diploid Nuclei (LO10-12)

Cells can be classified by the number of chromosome sets they contain:

  • Diploid: A nucleus containing two sets of chromosomes. In humans, this is 23 pairs (46 total). Body cells are diploid.
  • Haploid: A nucleus containing a single set of chromosomes. In humans, this is 23 single chromosomes. Gametes (sperm and egg) are haploid.
TermNumber of Chromosome SetsHuman Number
DiploidTwo sets (pairs)Body cells (somatic)
HaploidSingle setGametes (sperm, egg)
Diploid Nucleus
A nucleus containing two sets of chromosomes (23 pairs in humans).
Haploid Nucleus
A nucleus containing a single set of chromosomes (23 single in humans).
⚠︎ Chromosome Numbers
Error: Confusing the number of chromosomes with the number of pairs.

Correction: Human diploid cells have 23 pairs (46 total). Human haploid cells have 23 single chromosomes. Do not say haploid cells have 46.

Describing Ploidy
When to use: When asked to describe haploid or diploid nuclei.

Why examiners accept this: Use the exact phrase 'single set' for haploid and 'two sets' (or 'pairs') for diploid. Mentioning '23 pairs' for humans is also accepted.

Example: 'Describe a diploid nucleus.' Answer: 'A nucleus containing two sets of chromosomes.'

Ploidy Definitions
Q:
What is a haploid nucleus?
A:
A nucleus containing a single set of chromosomes.
Q:
How many pairs of chromosomes are in a human diploid cell?
A:
23 pairs
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